Student Life
Rice gene discovery could cut fertiliser use while protecting yields
Our study clearly shows that this regulator is a promising target for sustainable crop improvement. It was extraordinary to see the difference that the improved version of the gene had on rice yields during our field trials.
Corresponding author Dr Zhe Ji, Department of Biology
Nitrogen fertiliser is essential for modern agriculture but is environmentally costly, contributing to greenhouse gas emissions, water pollution, and soil degradation. Crops typically respond to nitrogen deficiency by investing more in root growth to forage for nutrients, often at the expense of shoot development and grain production. While adaptive in the wild, this trade-off limits agricultural productivity.
Up to now, the molecular driver of this developmental switch has been unknown. In the new study, the researchers not only identified the gene responsible, but demonstrated that manipulating this in rice can maintain shoot growth and yields even when nitrogen levels are low.
In controlled greenhouse and field experiments, the researchers showed that rice plants lacking a functional version of a gene called WRINKLED1a lost the ability to invest more in root growth under low-nitrogen conditions, and had reduced shoot growth when nitrogen was abundant. Conversely, plants genetically modified to overexpress the gene showed stronger growth in both roots and shoots, as well as a more constant root-to-shoot ratio as external nitrogen levels varied.
Introducing the superior version of WRINKLED1a (right side plant in each pair) enhanced rice yield under both low and high fertiliser application levels. Credit: Professor Shan Li.
By screening over 3000 rice cultivars, the team identified a natural version of the gene that is expressed more strongly and used traditional plant breeding to cross this into rice plants carrying a weaker version. Over three field trials carried out in Hainan and Anhui provinces, China, rice plants with this improved allele maintained a more stable root-to-shoot ratio across different nitrogen conditions and delivered higher yields under low fertiliser input. This resulted in a 23.7% increase in yield under low nitrogen fertiliser application (120 kg/ha) and a 19.9% increase under high fertiliser application (300 kg/ha).
Corresponding author Dr Zhe Ji (Department of Biology, University of Oxford and Calleva Research Centre) said: ‘Our study clearly shows that this regulator is a promising target for sustainable crop improvement. It was extraordinary to see the difference that the improved version of the gene had on rice yields during our field trials.’
The team demonstrated that WRINKLED1a has distinct roles in the shoot and root. In the shoot, it acts as an activator, switching on a key regulatory gene (NGR5) that promotes shoot branching. In the roots, WRINKLED1a activates genes involved with nitrogen uptake. It also disrupts the formation of a protein complex which normally stops the accumulation of auxin – a plant hormone that promotes root growth. Interestingly, WRINKLED1a does not disrupt this protein complex in the shoot, showing that its roles are tissue-specific.
Diagram showing how WRINKLED1a regulates shoot and root growth in rice. Credit: Caroline Wood, University of Oxford.
Rice is the staple crop for over half the world’s population (FAO) yet global harvests are threatened by climate change, with studies indicating that every 1°C rise during the rice-growing season can reduce yields by over 8%. Nitrogen fertilisers are one of the largest input costs for rice production – around a third of the overall production costs for some farmers – and their use itself contributes to climate change. By enabling farmers to maintain high yields whilst reducing their reliance on fertilisers, these new results could therefore have a significant impact on global food security.
Lead author Dr Shan Li (Nanjing Agricultural University, China) added: ‘WRINKLED1a helps rice avoid the usual ‘more roots, less shoot’ trade-off under nitrogen limitation, supporting stable yields with lower nitrogen inputs. The next step is to investigate whether homologous genes in other crops, such as wheat and maize, can be leveraged to achieve similar outcomes.’
The study ‘OsWRI1a coordinates systemic growth responses to nitrogen availability in rice’ has been published in Science.
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Student Life
Oxford-led study develops calculator to predict long-term cognitive impact of strokes
A new predictive tool has been developed by a team of researchers to help clinicians identify which stroke patients are most likely to experience long-term cognitive difficulties. The ‘Cognition Calculator’, introduced in a study published in The Lancet: Healthy Longevity, uses information routinely recorded during hospital care to estimate the likelihood of problems with thinking, memory and communication six months after a stroke.
The study, conducted by researchers at the University of Oxford and the University of Birmingham, developed and tested a statistical model using clinical data collected from stroke patients during the early stages of hospital care. The model draws on data, including results from cognitive screening tests alongside information such as age and stroke severity. Researchers found that early cognitive performance was one of the strongest indicators of longer-term outcomes.
Cognitive impairment is common following a stroke, but can be difficult to anticipate. Whilst post-stroke care has traditionally focused on physical recovery and preventing future strokes, researchers say thinking and communication difficulties are a major factor in patients’ long-term quality of life.
Professor Nele Demeyere, who led the research team, told Cherwell: “Many colleagues recognise the challenge of discussing cognitive outcomes with patients when there is so much uncertainty, so there is interest in tools that could help structure those conversations more clearly.”
Demeyere emphasised to Cherwell that the calculator is not yet intended to be used as a finished clinical product. Instead, she described the research as providing “rigorous groundwork” for future research to refine and test the model in wider clinical settings.
The research comes as the NHS is increasingly using digital tools and artificial intelligence to improve stroke care, including software now deployed across stroke centres in England to help clinicians analyse brain scans and make faster treatment decisions. Updated national stroke guidelines have also placed greater emphasis on early cognitive screening and long-term rehabilitation.
Dr Andrea Kusec, another Oxford researcher involved in the project, told Cherwell: “The response has been very positive, with many recognising the value of developing tools that can support conversations about what ‘life after stroke’ will be like.”
She added: “Clinicians often are key in providing messages of hope and allay some of this uncertainty – this tool can become a way to support those tough conversations.”
The study also highlights the wide range of cognitive recovery after stroke. According to Kusec, one of the most surprising findings was how differently prediction models performed depending on the type of cognitive impairment involved, such as language, memory, or executive function. “This really speaks to the individual nature of post-stroke cognitive outcomes”, she said.
Researchers hope the model will now be tested in larger patient groups and across different healthcare settings. If validated further, it could help clinicians identify patients who may benefit from closer monitoring, targeted rehabilitation, or additional support.
Demeyere told Cherwell that the broader aim is to ensure cognitive health is recognised as a central part of stroke recovery. “Post-stroke care has historically focused, understandably, on survival and preventing recurrent strokes. Increasingly, we recognise that cognitive and communication difficulties are central to long-term quality of life… This study represents one step in that direction. It reflects a broader shift towards viewing cognitive health as a core component of stroke care.”
Student Life
Chewe Munkonge due to become Oxford’s first Black Lord Mayor
Councillor Chewe Munkonge has been announced as Oxford’s next Lord Mayor, becoming the first Black person to hold the city’s highest civic office. The nomination was confirmed at a meeting of Oxford City Council on 23rd March by council leader Sudan Brown. Mukonge is expected to take up the largely ceremonial role for the 2026/2027 civic year, subject to his re-election in May.
Munkonge, who represents Quarry and Risinghurst ward, was first elected to the council in 2014 and currently serves as Cabinet Member for a Healthy, Fairer Oxford, as well as the council’s Small Business Champion. He also serves as the Central Administration Officer of the Oxford Trust, where he supports “all the operations of The Oxford Trust and Science Oxford’s events and education activities”. Outside politics, Munkonge works as a Central Admin Officer for a local charity and previously served as a governor at The Swan School between 2019 and 2025.
The Lord Mayor of Oxford typically undertakes over 300 engagements annually, including leading the city’s Remembrance Sunday service and attending royal visits, and supporting organisations. During his term, Munkonge has chosen Sobell House and St Theresa as his official charities. Sobell House Hospice is a local charity that provides specialist support for people with life-limiting illnesses and their families.
The Lord Mayor role is a politically neutral position appointed annually by Oxford City Council, typically at its Annual Meeting in May. By convention, it is offered to the longest-serving councillor who has not previously held the office.
Alongside Munkonge’s appointment, Councillor Louise Upton, the outgoing Lord Mayor, has been named Deputy Lord Mayor, while Councillor Linda Smith will serve as Sheriff of Oxford.
In a press release statement, Munkonge said: “I am deeply humbled and truly honoured to be chosen as the next Lord Mayor of Oxford… As the first Black Lord Mayor of our city, I stand on the shoulders of those who paved the way, and I hope to be a source of inspiration for future generations.”
Student Life
New study finds that stored sperm deteriorates across the animal kingdom
Sperm tagged with green fluorescent protein in the sperm storage organ of a female Drosophila fruit fly. Credit: Krish Sanghvi.
The findings are based on a major, cross-species analysis which revealed a shared pattern across many animals, from insects to mammals. Sperm that is stored (whether in males or females) deteriorates rapidly – resulting in reduced sperm performance, fertilisation success, and embryo quality. Crucially, the new study also offers insights into why this happens.
The researchers carried out a meta-analysis of 115 human studies (involving 54,889 men) and 56 studies across 30 non-human species. This confirmed that mature sperm in storage generally deteriorates in quality independently of the age of the male – a process called post-meiotic sperm senescence.
In humans, longer periods of sexual abstinence were associated with increased sperm DNA damage and oxidative stress, along with reduced sperm motility and viability.
Co-lead author Dr Rebecca Dean (Department of Biology, University of Oxford) said: ‘Because sperm are highly mobile and have minimal cytoplasm, they quickly exhaust their stored energy reserves and have limited capacity for repair. This makes storage particularly damaging compared to other types of cells. Our study highlights how regular ejaculation can provide a small but meaningful boost to male fertility.’
Differences between males and females
Sperm quickly exhaust their stored energy reserves and have limited capacity for repair. Our study highlights how regular ejaculation can provide a small but meaningful boost to male fertility.
Co-lead author Dr Rebecca Dean (Department of Biology)
Both male and female animals can store sperm as a reproductive strategy (in humans, sperm can last for several days in females but the effects of such storage are unknown). In males this ensures enough sperm are present for mating, and in females this can enable reproduction even when males are scarce. However, the study found a striking difference in the rate of sperm deterioration in males versus females. In the species studied, females are generally better than males at preserving sperm quality long-term.
‘This likely reflects the evolution of female-specific adaptations, such as specialised storage organs that provide antioxidants to extend sperm viability’, explained senior author Dr Irem Sepil (Department of Biology, University of Oxford). ‘These organs often secrete reproductive fluids to nourish sperm and could provide unexplored avenues for biomimicking technology to improve artificial sperm storage in the future.’
Lead author Dr Krish Sanghvi (Department of Biology, University of Oxford) added: ‘Ejaculates should be viewed as populations of individual sperm which undergo birth, death, ageing and selective mortality. The rates of these demographic processes can differ in males and females, mediating the “demographic” structure of sperm populations and sex-specific differences in sperm storage effects.’
Implications for human fertility
Sperm in the testes and sperm storage organs of a male Drosophila fruit fly. Credit: Krish Sanghvi.
That sperm can age in both sexes independently of the organism’s age has been largely ignored in reproductive medicine. The findings therefore have immediate implications for clinical practice. For instance, the results suggest that the upper limit of seven days in the WHO guidelines may be too long. This aligns with recent evidence suggesting that ejaculating within 48 hours of providing a sample can significantly improve IVF outcomes.
By breaking down the barriers between biomedical and zoological research, this study provides a new lens for understanding reproduction. Besides influencing protocols in fertility clinics and assisted reproduction, the findings could also benefit captive breeding programmes for endangered species – as well as deepening our understanding of how species evolved mechanisms to reduce sperm damage during storage.
The study ‘Sperm storage causes sperm senescence in human and non-human animals’ has been published in Proceedings of the Royal Society B.
For more information about this story or republishing this content, please contact [email protected]
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